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Supplementary material reporting R code for the manuscript ‘Population density affects sexual selection in an insect model’.
Here we tested the effect that the treatments (group and arena size)
had on the mating behaviour and reproductive success of focal
beetles.
Behavioural variables:
- Copulation attempts
-
Copulations per encounter
- Number of partners
- Number
copulations
- Copulations per partner
- Copulation duration
Before we started the analyses, we loaded all necessary packages and data.
rm(list = ls()) # Clear work environment
# Load R-packages ####
=cbind('ggeffects','ggplot2','gridExtra','lme4','lmerTest','readr','dplyr','EnvStats','cowplot','gridGraphics','car','RColorBrewer','boot','data.table','base','ICC','knitr')
list_of_packageslapply(list_of_packages, require, character.only = TRUE)
# Load data set ####
=read_delim("./data/Data_Winkler_et_al_2023_Denstiy.csv",";", escape_double = FALSE, trim_ws = TRUE)
D_data
# Set factors and levels for factors
$Week=as.factor(D_data$Week)
D_data$Sex=as.factor(D_data$Sex)
D_data$Gr_size=as.factor(D_data$Gr_size)
D_data$Gr_size <- factor(D_data$Gr_size, levels=c("SG","LG"))
D_data$Arena=as.factor(D_data$Arena)
D_data
## Subset data set ####
### Data according to denstiy ####
.26=D_data[D_data$Treatment=='D = 0.26',]
D_data_0.52=D_data[D_data$Treatment=='D = 0.52',]
D_data_0.67=D_data[D_data$Treatment=='D = 0.67',]
D_data_0.33=D_data[D_data$Treatment=='D = 1.33',]
D_data_1
### Subset data by sex ####
=D_data[D_data$Sex=='M',]
D_data_m=D_data[D_data$Sex=='F',]
D_data_f
### Calculate data relativized within treatment and sex ####
# Small group + large Area
.26=D_data[D_data$Treatment=='D = 0.26',]
D_data_0
.26$rel_m_RS=NA
D_data_0.26$rel_m_prop_RS=NA
D_data_0.26$rel_m_cMS=NA
D_data_0.26$rel_m_InSuc=NA
D_data_0.26$rel_m_feSuc=NA
D_data_0.26$rel_m_pFec=NA
D_data_0.26$rel_m_PS=NA
D_data_0.26$rel_m_pFec_compl=NA
D_data_0
.26$rel_f_RS=NA
D_data_0.26$rel_f_prop_RS=NA
D_data_0.26$rel_f_cMS=NA
D_data_0.26$rel_f_fec_pMate=NA
D_data_0
.26$rel_m_RS=D_data_0.26$m_RS/mean(D_data_0.26$m_RS,na.rm=T)
D_data_0.26$rel_m_prop_RS=D_data_0.26$m_prop_RS/mean(D_data_0.26$m_prop_RS,na.rm=T)
D_data_0.26$rel_m_cMS=D_data_0.26$m_cMS/mean(D_data_0.26$m_cMS,na.rm=T)
D_data_0.26$rel_m_InSuc=D_data_0.26$m_InSuc/mean(D_data_0.26$m_InSuc,na.rm=T)
D_data_0.26$rel_m_feSuc=D_data_0.26$m_feSuc/mean(D_data_0.26$m_feSuc,na.rm=T)
D_data_0.26$rel_m_pFec=D_data_0.26$m_pFec/mean(D_data_0.26$m_pFec,na.rm=T)
D_data_0.26$rel_m_PS=D_data_0.26$m_PS/mean(D_data_0.26$m_PS,na.rm=T)
D_data_0.26$rel_m_pFec_compl=D_data_0.26$m_pFec_compl/mean(D_data_0.26$m_pFec_compl,na.rm=T)
D_data_0
.26$rel_f_RS=D_data_0.26$f_RS/mean(D_data_0.26$f_RS,na.rm=T)
D_data_0.26$rel_f_prop_RS=D_data_0.26$f_prop_RS/mean(D_data_0.26$f_prop_RS,na.rm=T)
D_data_0.26$rel_f_cMS=D_data_0.26$f_cMS/mean(D_data_0.26$f_cMS,na.rm=T)
D_data_0.26$rel_f_fec_pMate=D_data_0.26$f_fec_pMate/mean(D_data_0.26$f_fec_pMate,na.rm=T)
D_data_0
# Large group + large Area
.52=D_data[D_data$Treatment=='D = 0.52',]
D_data_0#Relativize data
.52$rel_m_RS=NA
D_data_0.52$rel_m_prop_RS=NA
D_data_0.52$rel_m_cMS=NA
D_data_0.52$rel_m_InSuc=NA
D_data_0.52$rel_m_feSuc=NA
D_data_0.52$rel_m_pFec=NA
D_data_0.52$rel_m_PS=NA
D_data_0.52$rel_m_pFec_compl=NA
D_data_0
.52$rel_f_RS=NA
D_data_0.52$rel_f_prop_RS=NA
D_data_0.52$rel_f_cMS=NA
D_data_0.52$rel_f_fec_pMate=NA
D_data_0
.52$rel_m_RS=D_data_0.52$m_RS/mean(D_data_0.52$m_RS,na.rm=T)
D_data_0.52$rel_m_prop_RS=D_data_0.52$m_prop_RS/mean(D_data_0.52$m_prop_RS,na.rm=T)
D_data_0.52$rel_m_cMS=D_data_0.52$m_cMS/mean(D_data_0.52$m_cMS,na.rm=T)
D_data_0.52$rel_m_InSuc=D_data_0.52$m_InSuc/mean(D_data_0.52$m_InSuc,na.rm=T)
D_data_0.52$rel_m_feSuc=D_data_0.52$m_feSuc/mean(D_data_0.52$m_feSuc,na.rm=T)
D_data_0.52$rel_m_pFec=D_data_0.52$m_pFec/mean(D_data_0.52$m_pFec,na.rm=T)
D_data_0.52$rel_m_PS=D_data_0.52$m_PS/mean(D_data_0.52$m_PS,na.rm=T)
D_data_0.52$rel_m_pFec_compl=D_data_0.52$m_pFec_compl/mean(D_data_0.52$m_pFec_compl,na.rm=T)
D_data_0
.52$rel_f_RS=D_data_0.52$f_RS/mean(D_data_0.52$f_RS,na.rm=T)
D_data_0.52$rel_f_prop_RS=D_data_0.52$f_prop_RS/mean(D_data_0.52$f_prop_RS,na.rm=T)
D_data_0.52$rel_f_cMS=D_data_0.52$f_cMS/mean(D_data_0.52$f_cMS,na.rm=T)
D_data_0.52$rel_f_fec_pMate=D_data_0.52$f_fec_pMate/mean(D_data_0.52$f_fec_pMate,na.rm=T)
D_data_0
# Small group + small Area
.67=D_data[D_data$Treatment=='D = 0.67',]
D_data_0#Relativize data
.67$rel_m_RS=NA
D_data_0.67$rel_m_prop_RS=NA
D_data_0.67$rel_m_cMS=NA
D_data_0.67$rel_m_InSuc=NA
D_data_0.67$rel_m_feSuc=NA
D_data_0.67$rel_m_pFec=NA
D_data_0.67$rel_m_PS=NA
D_data_0.67$rel_m_pFec_compl=NA
D_data_0
.67$rel_f_RS=NA
D_data_0.67$rel_f_prop_RS=NA
D_data_0.67$rel_f_cMS=NA
D_data_0.67$rel_f_fec_pMate=NA
D_data_0
.67$rel_m_RS=D_data_0.67$m_RS/mean(D_data_0.67$m_RS,na.rm=T)
D_data_0.67$rel_m_prop_RS=D_data_0.67$m_prop_RS/mean(D_data_0.67$m_prop_RS,na.rm=T)
D_data_0.67$rel_m_cMS=D_data_0.67$m_cMS/mean(D_data_0.67$m_cMS,na.rm=T)
D_data_0.67$rel_m_InSuc=D_data_0.67$m_InSuc/mean(D_data_0.67$m_InSuc,na.rm=T)
D_data_0.67$rel_m_feSuc=D_data_0.67$m_feSuc/mean(D_data_0.67$m_feSuc,na.rm=T)
D_data_0.67$rel_m_pFec=D_data_0.67$m_pFec/mean(D_data_0.67$m_pFec,na.rm=T)
D_data_0.67$rel_m_PS=D_data_0.67$m_PS/mean(D_data_0.67$m_PS,na.rm=T)
D_data_0.67$rel_m_pFec_compl=D_data_0.67$m_pFec_compl/mean(D_data_0.67$m_pFec_compl,na.rm=T)
D_data_0
.67$rel_f_RS=D_data_0.67$f_RS/mean(D_data_0.67$f_RS,na.rm=T)
D_data_0.67$rel_f_prop_RS=D_data_0.67$f_prop_RS/mean(D_data_0.67$f_prop_RS,na.rm=T)
D_data_0.67$rel_f_cMS=D_data_0.67$f_cMS/mean(D_data_0.67$f_cMS,na.rm=T)
D_data_0.67$rel_f_fec_pMate=D_data_0.67$f_fec_pMate/mean(D_data_0.67$f_fec_pMate,na.rm=T)
D_data_0
# Large group + small Area
.33=D_data[D_data$Treatment=='D = 1.33',]
D_data_1#Relativize data
.33$rel_m_RS=NA
D_data_1.33$rel_m_prop_RS=NA
D_data_1.33$rel_m_cMS=NA
D_data_1.33$rel_m_InSuc=NA
D_data_1.33$rel_m_feSuc=NA
D_data_1.33$rel_m_pFec=NA
D_data_1.33$rel_m_PS=NA
D_data_1.33$rel_m_pFec_compl=NA
D_data_1
.33$rel_f_RS=NA
D_data_1.33$rel_f_prop_RS=NA
D_data_1.33$rel_f_cMS=NA
D_data_1.33$rel_f_fec_pMate=NA
D_data_1
.33$rel_m_RS=D_data_1.33$m_RS/mean(D_data_1.33$m_RS,na.rm=T)
D_data_1.33$rel_m_prop_RS=D_data_1.33$m_prop_RS/mean(D_data_1.33$m_prop_RS,na.rm=T)
D_data_1.33$rel_m_cMS=D_data_1.33$m_cMS/mean(D_data_1.33$m_cMS,na.rm=T)
D_data_1.33$rel_m_InSuc=D_data_1.33$m_InSuc/mean(D_data_1.33$m_InSuc,na.rm=T)
D_data_1.33$rel_m_feSuc=D_data_1.33$m_feSuc/mean(D_data_1.33$m_feSuc,na.rm=T)
D_data_1.33$rel_m_pFec=D_data_1.33$m_pFec/mean(D_data_1.33$m_pFec,na.rm=T)
D_data_1.33$rel_m_PS=D_data_1.33$m_PS/mean(D_data_1.33$m_PS,na.rm=T)
D_data_1.33$rel_m_pFec_compl=D_data_1.33$m_pFec_compl/mean(D_data_1.33$m_pFec_compl,na.rm=T)
D_data_1
.33$rel_f_RS=D_data_1.33$f_RS/mean(D_data_1.33$f_RS,na.rm=T)
D_data_1.33$rel_f_prop_RS=D_data_1.33$f_prop_RS/mean(D_data_1.33$f_prop_RS,na.rm=T)
D_data_1.33$rel_f_cMS=D_data_1.33$f_cMS/mean(D_data_1.33$f_cMS,na.rm=T)
D_data_1.33$rel_f_fec_pMate=D_data_1.33$f_fec_pMate/mean(D_data_1.33$f_fec_pMate,na.rm=T)
D_data_1
### Reduce treatments to arena and population size ####
# Arena size
=rbind(D_data_0.26,D_data_0.52)
D_data_Large_arena=rbind(D_data_0.67,D_data_1.33)
D_data_Small_arena
# Population size
=rbind(D_data_0.26,D_data_0.67)
D_data_Small_pop=rbind(D_data_0.52,D_data_1.33)
D_data_Large_pop
## Set figure schemes ####
# Set color-sets for figures
=brewer.pal(4, 'Dark2')
colpal=c("#b2182b","#2166AC")
colpal2=brewer.pal(4, 'Paired')
colpal3
# Set theme for ggplot2 figures
=theme(panel.border = element_blank(),
fig_themeplot.margin = margin(0,2.2,0,0.2,"cm"),
plot.title = element_text(hjust = 0.5),
panel.background = element_blank(),
legend.key=element_blank(),
panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
legend.position = c(1.25, 0.8),
plot.tag.position=c(0.01,0.98),
legend.title = element_blank(),
legend.text = element_text(colour="black", size=10),
axis.line.x = element_line(colour = "black", size = 1),
axis.line.y = element_line(colour = "black", size = 1),
axis.text.x = element_text(face="plain", color="black", size=16, angle=0),
axis.text.y = element_text(face="plain", color="black", size=16, angle=0),
axis.title.x = element_text(size=16,face="plain", margin = margin(r=0,10,0,0)),
axis.title.y = element_text(size=16,face="plain", margin = margin(r=10,0,0,0)),
axis.ticks = element_line(size = 1),
axis.ticks.length = unit(.3, "cm"))
## Create customized functions for analysis ####
# Create function to calculate standard error and upper/lower standard deviation
<- function(x) sd(x,na.rm=T) / sqrt(length(na.exclude(x)))
standard_error <- function(x) mean(x,na.rm=T)+((standard_error(x))*qnorm(0.975))
upper_CI <- function(x) mean(x,na.rm=T)-((standard_error(x))*qnorm(0.975))
lower_CI
<- function(x) mean(x,na.rm=T)+(sd(x)/2)
upper_SD <- function(x) mean(x,na.rm=T)-(sd(x)/2) lower_SD
First, we calculated means and SE for each treatment: Mean number of copulation attempts in small groups (SE) = 11.04 (0.97)
mean(D_data$m_Total_Encounters[D_data$Gr_size=='SG'],na.rm=T)
standard_error(D_data$m_Total_Encounters[D_data$Gr_size=='SG'])
Mean number of copulation attempts in large groups (SE) = 7.64 (0.49)
mean(D_data$m_Total_Encounters[D_data$Gr_size=='LG'],na.rm=T)
standard_error(D_data$m_Total_Encounters[D_data$Gr_size=='LG'])
Mean number of copulation attempts in large arena size (SE) = 8.98 (0.72)
mean(D_data$m_Total_Encounters[D_data$Arena=='Large'],na.rm=T)
standard_error(D_data$m_Total_Encounters[D_data$Arena=='Large'])
Mean number of copulation attempts in small arena size (SE) = 9.33 (0.8)
mean(D_data$m_Total_Encounters[D_data$Arena=='Small'],na.rm=T)
standard_error(D_data$m_Total_Encounters[D_data$Arena=='Small'])
GLM for copulation attempts including interaction between group and arena size treatment:
=glm(m_Total_Encounters~Gr_size*Arena,data=D_data,family = quasipoisson)
mod3Anova(mod3,type=2)
Analysis of Deviance Table (Type II tests)
Response: m_Total_Encounters
LR Chisq Df Pr(>Chisq)
Gr_size 11.4368 1 0.0007201 ***
Arena 0.0520 1 0.8195638
Gr_size:Arena 0.2226 1 0.6370758
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
GLM for copulation attempts excluding interaction between group and arena size treatment:
.1=glm(m_Total_Encounters~Gr_size+Arena,data=D_data,family = quasipoisson)
mod3summary(mod3.1)
Call:
glm(formula = m_Total_Encounters ~ Gr_size + Arena, family = quasipoisson,
data = D_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-3.8812 -1.4114 -0.2269 0.8185 5.1613
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 2.41598 0.09612 25.135 < 2e-16 ***
Gr_sizeLG -0.37295 0.10996 -3.392 0.000992 ***
ArenaSmall -0.02515 0.10978 -0.229 0.819291
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
(Dispersion parameter for quasipoisson family taken to be 2.780109)
Null deviance: 302.24 on 103 degrees of freedom
Residual deviance: 269.83 on 101 degrees of freedom
(99 Beobachtungen als fehlend gelöscht)
AIC: NA
Number of Fisher Scoring iterations: 5
Anova(mod3.1,type=2)
Analysis of Deviance Table (Type II tests)
Response: m_Total_Encounters
LR Chisq Df Pr(>Chisq)
Gr_size 11.5351 1 0.0006829 ***
Arena 0.0525 1 0.8188029
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
We calculated means and SE for each treatment: Mean number of copulation attempts in small groups (SE) = 8.8 (0.68)
mean(D_data$f_Total_Encounters[D_data$Gr_size=='SG'],na.rm=T)
standard_error(D_data$f_Total_Encounters[D_data$Gr_size=='SG'])
Mean number of copulation attempts in large groups (SE) = 6.36 (0.44)
mean(D_data$f_Total_Encounters[D_data$Gr_size=='LG'],na.rm=T)
standard_error(D_data$f_Total_Encounters[D_data$Gr_size=='LG'])
Mean number of copulation attempts in large arena size (SE) = 8.1 (0.65)
mean(D_data$f_Total_Encounters[D_data$Arena=='Large'],na.rm=T)
standard_error(D_data$f_Total_Encounters[D_data$Arena=='Large'])
Mean number of copulation attempts in small arena size (SE) = 7.25 (0.58)
mean(D_data$f_Total_Encounters[D_data$Arena=='Small'],na.rm=T)
standard_error(D_data$f_Total_Encounters[D_data$Arena=='Small'])
GLM for copulation attempts including interaction between group and arena size treatment:
=glm(f_Total_Encounters~Gr_size*Arena,data=D_data,family = quasipoisson)
mod4Anova(mod4,type=2)
Analysis of Deviance Table (Type II tests)
Response: f_Total_Encounters
LR Chisq Df Pr(>Chisq)
Gr_size 8.0855 1 0.004462 **
Arena 0.2888 1 0.590966
Gr_size:Arena 0.5385 1 0.463060
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
GLM for copulation attempts excluding interaction between group and arena size treatment:
.1=glm(f_Total_Encounters~Gr_size+Arena,data=D_data,family = quasipoisson)
mod4summary(mod4.1)
Call:
glm(formula = f_Total_Encounters ~ Gr_size + Arena, family = quasipoisson,
data = D_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-4.2437 -1.0822 -0.2262 0.9494 3.6489
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 2.19774 0.07997 27.483 < 2e-16 ***
Gr_sizeLG -0.31505 0.11178 -2.819 0.00586 **
ArenaSmall -0.05846 0.10867 -0.538 0.59183
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
(Dispersion parameter for quasipoisson family taken to be 2.169405)
Null deviance: 241.05 on 98 degrees of freedom
Residual deviance: 221.13 on 96 degrees of freedom
(104 Beobachtungen als fehlend gelöscht)
AIC: NA
Number of Fisher Scoring iterations: 5
Anova(mod4.1,type=2)
Analysis of Deviance Table (Type II tests)
Response: f_Total_Encounters
LR Chisq Df Pr(>Chisq)
Gr_size 8.1140 1 0.004392 **
Arena 0.2899 1 0.590313
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
We calculated means and SE for each treatment: Number of copulations per attempt in small groups (SE) = 0.32 (0.03)
mean(D_data$m_TotMatings[D_data$Gr_size=='SG']/(D_data$m_TotMatings[D_data$Gr_size=='SG']+D_data$m_Attempts_number[D_data$Gr_size=='SG']),na.rm=T)
standard_error(D_data$m_TotMatings[D_data$Gr_size=='SG']/(D_data$m_TotMatings[D_data$Gr_size=='SG']+D_data$m_Attempts_number[D_data$Gr_size=='SG']))
Number of copulations per attempt in large groups (SE) = 0.29 (0.02)
mean(D_data$m_TotMatings[D_data$Gr_size=='LG']/(D_data$m_TotMatings[D_data$Gr_size=='LG']+D_data$m_Attempts_number[D_data$Gr_size=='LG']),na.rm=T)
standard_error(D_data$m_TotMatings[D_data$Gr_size=='LG']/(D_data$m_TotMatings[D_data$Gr_size=='LG']+D_data$m_Attempts_number[D_data$Gr_size=='LG']))
Number of copulations per attempt in large arena size (SE) = 0.31 (0.03)
mean(D_data$m_TotMatings[D_data$Arena=='Large']/(D_data$m_TotMatings[D_data$Arena=='Large']+D_data$m_Attempts_number[D_data$Arena=='Large']),na.rm=T)
standard_error(D_data$m_TotMatings[D_data$Arena=='Large']/(D_data$m_TotMatings[D_data$Arena=='Large']+D_data$m_Attempts_number[D_data$Arena=='Large']))
Number of copulations per attempt in small arena size (SE) = 0.3 (0.03)
mean(D_data$m_TotMatings[D_data$Arena=='Small']/(D_data$m_TotMatings[D_data$Arena=='Small']+D_data$m_Attempts_number[D_data$Arena=='Small']),na.rm=T)
standard_error(D_data$m_TotMatings[D_data$Arena=='Small']/(D_data$m_TotMatings[D_data$Arena=='Small']+D_data$m_Attempts_number[D_data$Arena=='Small']))
GLM for copulations per attempt including interaction between group and arena size treatment:
=glm(cbind(m_TotMatings,m_Attempts_number)~Gr_size*Arena,data=D_data,family = quasibinomial)
mod5Anova(mod5,type=2)
Analysis of Deviance Table (Type II tests)
Response: cbind(m_TotMatings, m_Attempts_number)
LR Chisq Df Pr(>Chisq)
Gr_size 0.18848 1 0.6642
Arena 0.28809 1 0.5914
Gr_size:Arena 0.11436 1 0.7352
GLM for copulations per attempt excluding interaction between group and arena size treatment:
.1=glm(cbind(m_TotMatings,m_Attempts_number)~Gr_size+Arena,data=D_data,family = quasibinomial)
mod5summary(mod5.1)
Call:
glm(formula = cbind(m_TotMatings, m_Attempts_number) ~ Gr_size +
Arena, family = quasibinomial, data = D_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-3.6291 -0.8482 -0.0073 0.7556 4.4019
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -0.94176 0.16198 -5.814 7.17e-08 ***
Gr_sizeLG 0.08134 0.18650 0.436 0.664
ArenaSmall -0.10058 0.18667 -0.539 0.591
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
(Dispersion parameter for quasibinomial family taken to be 1.623469)
Null deviance: 180.01 on 103 degrees of freedom
Residual deviance: 179.10 on 101 degrees of freedom
(99 Beobachtungen als fehlend gelöscht)
AIC: NA
Number of Fisher Scoring iterations: 4
Anova(mod5.1,type=2)
Analysis of Deviance Table (Type II tests)
Response: cbind(m_TotMatings, m_Attempts_number)
LR Chisq Df Pr(>Chisq)
Gr_size 0.19011 1 0.6628
Arena 0.29059 1 0.5898
We calculated means and SE for each treatment: Number of copulations per attempt in small groups (SE) = 0.37 (0.04)
mean(D_data$f_TotMatings[D_data$Gr_size=='SG']/(D_data$f_TotMatings[D_data$Gr_size=='SG']+D_data$f_Attempts_number[D_data$Gr_size=='SG']),na.rm=T)
standard_error(D_data$f_TotMatings[D_data$Gr_size=='SG']/(D_data$f_TotMatings[D_data$Gr_size=='SG']+D_data$f_Attempts_number[D_data$Gr_size=='SG']))
Number of copulations per attempt in large groups (SE) = 0.32 (0.04)
mean(D_data$f_TotMatings[D_data$Gr_size=='LG']/(D_data$f_TotMatings[D_data$Gr_size=='LG']+D_data$f_Attempts_number[D_data$Gr_size=='LG']),na.rm=T)
standard_error(D_data$f_TotMatings[D_data$Gr_size=='LG']/(D_data$f_TotMatings[D_data$Gr_size=='LG']+D_data$f_Attempts_number[D_data$Gr_size=='LG']))
Number of copulations per attempt in large arena size (SE) = 0.39 (0.04)
mean(D_data$f_TotMatings[D_data$Arena=='Large']/(D_data$f_TotMatings[D_data$Arena=='Large']+D_data$f_Attempts_number[D_data$Arena=='Large']),na.rm=T)
standard_error(D_data$f_TotMatings[D_data$Arena=='Large']/(D_data$f_TotMatings[D_data$Arena=='Large']+D_data$f_Attempts_number[D_data$Arena=='Large']))
Number of copulations per attempt in small arena size (SE) = 0.3 (0.04)
mean(D_data$f_TotMatings[D_data$Arena=='Small']/(D_data$f_TotMatings[D_data$Arena=='Small']+D_data$f_Attempts_number[D_data$Arena=='Small']),na.rm=T)
standard_error(D_data$f_TotMatings[D_data$Arena=='Small']/(D_data$f_TotMatings[D_data$Arena=='Small']+D_data$f_Attempts_number[D_data$Arena=='Small']))
GLM for copulations per attempt including interaction between group and arena size treatment:
=glm(cbind(f_TotMatings,f_Attempts_number)~Gr_size*Arena,data=D_data,family = quasibinomial)
mod6Anova(mod6,type=2)
Analysis of Deviance Table (Type II tests)
Response: cbind(f_TotMatings, f_Attempts_number)
LR Chisq Df Pr(>Chisq)
Gr_size 0.00646 1 0.9359
Arena 1.62223 1 0.2028
Gr_size:Arena 1.63103 1 0.2016
GLM for copulations per attempt excluding interaction between group and arena size treatment:
.1=glm(cbind(f_TotMatings,f_Attempts_number)~Gr_size+Arena,data=D_data,family = quasibinomial)
mod6summary(mod6.1)
Call:
glm(formula = cbind(f_TotMatings, f_Attempts_number) ~ Gr_size +
Arena, family = quasibinomial, data = D_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-2.88927 -0.92593 -0.04092 0.98199 2.72954
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -0.64091 0.14996 -4.274 4.57e-05 ***
Gr_sizeLG -0.01687 0.21061 -0.080 0.936
ArenaSmall -0.25990 0.20536 -1.266 0.209
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
(Dispersion parameter for quasibinomial family taken to be 1.67619)
Null deviance: 183.58 on 97 degrees of freedom
Residual deviance: 180.78 on 95 degrees of freedom
(104 Beobachtungen als fehlend gelöscht)
AIC: NA
Number of Fisher Scoring iterations: 4
Anova(mod6.1,type=2)
Analysis of Deviance Table (Type II tests)
Response: cbind(f_TotMatings, f_Attempts_number)
LR Chisq Df Pr(>Chisq)
Gr_size 0.00642 1 0.9362
Arena 1.61064 1 0.2044
We calculated means and SE for each treatment: Mean number of partners in small groups (SE) = 1.63 (0.11)
mean(D_data$m_cMS[D_data$Gr_size=='SG'],na.rm=T)
standard_error(D_data$m_cMS[D_data$Gr_size=='SG'])
Mean number of partners in large groups (SE) = 1.69 (0.14)
mean(D_data$m_cMS[D_data$Gr_size=='LG'],na.rm=T)
standard_error(D_data$m_cMS[D_data$Gr_size=='LG'])
Mean number of partners in large arena size (SE) = 1.69 (0.14)
mean(D_data$m_cMS[D_data$Arena=='Large'],na.rm=T)
standard_error(D_data$m_cMS[D_data$Arena=='Large'])
Mean number of partners in small arena size (SE) = 1.63 (0.12)
mean(D_data$m_cMS[D_data$Arena=='Small'],na.rm=T)
standard_error(D_data$m_cMS[D_data$Arena=='Small'])
GLM for number of partners including interaction between group and arena size treatment
=glm(m_cMS~Gr_size*Arena,data=D_data,family = quasipoisson)
mod7Anova(mod7,type=2)
Analysis of Deviance Table (Type II tests)
Response: m_cMS
LR Chisq Df Pr(>Chisq)
Gr_size 0.071366 1 0.7894
Arena 0.069055 1 0.7927
Gr_size:Arena 0.004674 1 0.9455
GLM for number of partners excluding interaction between group and arena size treatment
.1=glm(m_cMS~Gr_size+Arena,data=D_data,family = quasipoisson)
mod7summary(mod7.1)
Call:
glm(formula = m_cMS ~ Gr_size + Arena, family = quasipoisson,
data = D_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-1.8491 -0.5529 0.2162 0.2670 2.0373
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 0.50567 0.10574 4.782 5.92e-06 ***
Gr_sizeLG 0.03063 0.11416 0.268 0.789
ArenaSmall -0.02995 0.11346 -0.264 0.792
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
(Dispersion parameter for quasipoisson family taken to be 0.5381483)
Null deviance: 65.695 on 103 degrees of freedom
Residual deviance: 65.603 on 101 degrees of freedom
(99 Beobachtungen als fehlend gelöscht)
AIC: NA
Number of Fisher Scoring iterations: 5
Anova(mod7.1,type=2)
Analysis of Deviance Table (Type II tests)
Response: m_cMS
LR Chisq Df Pr(>Chisq)
Gr_size 0.072077 1 0.7883
Arena 0.069742 1 0.7917
We calculated means and SE for each treatment: Mean number of partners in small groups (SE) = 1.69 (0.12)
mean(D_data$f_cMS[D_data$Gr_size=='SG'],na.rm=T)
standard_error(D_data$f_cMS[D_data$Gr_size=='SG'])
Mean number of partners in large groups (SE) = 1.73 (0.2)
mean(D_data$f_cMS[D_data$Gr_size=='LG'],na.rm=T)
standard_error(D_data$f_cMS[D_data$Gr_size=='LG'])
Mean number of partners in large arena size (SE) = 1.86 (0.15)
mean(D_data$f_cMS[D_data$Arena=='Large'],na.rm=T)
standard_error(D_data$f_cMS[D_data$Arena=='Large'])
Mean number of partners in small arena size (SE) = 1.54 (0.17)
mean(D_data$f_cMS[D_data$Arena=='Small'],na.rm=T)
standard_error(D_data$f_cMS[D_data$Arena=='Small'])
GLM for number of partners including interaction between group and arena size treatment:
=glm(f_cMS~Gr_size*Arena,data=D_data,family = quasipoisson)
mod8Anova(mod8,type=2)
Analysis of Deviance Table (Type II tests)
Response: f_cMS
LR Chisq Df Pr(>Chisq)
Gr_size 0.21523 1 0.6427
Arena 2.22688 1 0.1356
Gr_size:Arena 1.06086 1 0.3030
GLM for number of partners excluding interaction between group and arena size treatment:
.1=glm(f_cMS~Gr_size+Arena,data=D_data,family = quasipoisson)
mod8summary(mod8.1)
Call:
glm(formula = f_cMS ~ Gr_size + Arena, family = quasipoisson,
data = D_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-1.9676 -0.6646 0.1318 0.3968 2.1580
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 0.59849 0.10194 5.871 6.19e-08 ***
Gr_sizeLG 0.06204 0.13393 0.463 0.644
ArenaSmall -0.19970 0.13457 -1.484 0.141
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
(Dispersion parameter for quasipoisson family taken to be 0.7318014)
Null deviance: 89.305 on 98 degrees of freedom
Residual deviance: 87.650 on 96 degrees of freedom
(104 Beobachtungen als fehlend gelöscht)
AIC: NA
Number of Fisher Scoring iterations: 5
Anova(mod8.1,type=2)
Analysis of Deviance Table (Type II tests)
Response: f_cMS
LR Chisq Df Pr(>Chisq)
Gr_size 0.2142 1 0.6435
Arena 2.2162 1 0.1366
We calculated means and SE for each treatment: Mean number of copulations in small groups (SE) = 2.98 (0.31)
mean(D_data$m_TotMatings[D_data$Gr_size=='SG'],na.rm=T)
standard_error(D_data$m_TotMatings[D_data$Gr_size=='SG'])
Mean number of copulations in large groups (SE) = 2.21 (0.21)
mean(D_data$m_TotMatings[D_data$Gr_size=='LG'],na.rm=T)
standard_error(D_data$m_TotMatings[D_data$Gr_size=='LG'])
Mean number of copulations in large arena size (SE) = 2.6 (0.29)
mean(D_data$m_TotMatings[D_data$Arena=='Large'],na.rm=T)
standard_error(D_data$m_TotMatings[D_data$Arena=='Large'])
Mean number of copulations in small arena size (SE) = 2.49 (0.22)
mean(D_data$m_TotMatings[D_data$Arena=='Small'],na.rm=T)
standard_error(D_data$m_TotMatings[D_data$Arena=='Small'])
GLM for number of copulations including interaction between group and arena size treatment:
=glm(m_TotMatings~Gr_size*Arena,data=D_data,family = quasipoisson)
mod9Anova(mod9,type=2)
Analysis of Deviance Table (Type II tests)
Response: m_TotMatings
LR Chisq Df Pr(>Chisq)
Gr_size 4.8747 1 0.02725 *
Arena 0.4538 1 0.50056
Gr_size:Arena 0.4756 1 0.49043
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
GLM for number of copulations excluding interaction between group and arena size treatment:
.1=glm(m_TotMatings~Gr_size+Arena,data=D_data,family = quasipoisson)
mod9summary(mod9.1)
Call:
glm(formula = m_TotMatings ~ Gr_size + Arena, family = quasipoisson,
data = D_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-2.5067 -0.9610 -0.1962 0.4978 3.0725
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 1.14475 0.12532 9.135 7.21e-15 ***
Gr_sizeLG -0.31599 0.14338 -2.204 0.0298 *
ArenaSmall -0.09653 0.14375 -0.672 0.5034
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
(Dispersion parameter for quasipoisson family taken to be 1.321896)
Null deviance: 146.28 on 103 degrees of freedom
Residual deviance: 139.74 on 101 degrees of freedom
(99 Beobachtungen als fehlend gelöscht)
AIC: NA
Number of Fisher Scoring iterations: 5
Anova(mod9.1,type=2)
Analysis of Deviance Table (Type II tests)
Response: m_TotMatings
LR Chisq Df Pr(>Chisq)
Gr_size 4.8548 1 0.02757 *
Arena 0.4519 1 0.50143
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
We calculated means and SE for each treatment: Mean number of copulations in small groups (SE) = 2.83 (0.3)
mean(D_data$f_TotMatings[D_data$Gr_size=='SG'],na.rm=T)
standard_error(D_data$f_TotMatings[D_data$Gr_size=='SG'])
Mean number of copulations in large groups (SE) = 1.98 (0.25)
mean(D_data$f_TotMatings[D_data$Gr_size=='LG'],na.rm=T)
standard_error(D_data$f_TotMatings[D_data$Gr_size=='LG'])
Mean number of copulations in large arena size (SE) = 2.78 (0.29)
mean(D_data$f_TotMatings[D_data$Arena=='Large'],na.rm=T)
standard_error(D_data$f_TotMatings[D_data$Arena=='Large'])
Mean number of copulations in small arena size (SE) = 2.08 (0.27)
mean(D_data$f_TotMatings[D_data$Arena=='Small'],na.rm=T)
standard_error(D_data$f_TotMatings[D_data$Arena=='Small'])
GLM for number of copulations including interaction between group and arena size treatment:
=glm(f_TotMatings~Gr_size*Arena,data=D_data,family = quasipoisson)
mod10Anova(mod10,type=2)
Analysis of Deviance Table (Type II tests)
Response: f_TotMatings
LR Chisq Df Pr(>Chisq)
Gr_size 3.6584 1 0.05579 .
Arena 2.0796 1 0.14928
Gr_size:Arena 0.3714 1 0.54226
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
GLM for number of copulations excluding interaction between group and arena size treatment:
.1=glm(f_TotMatings~Gr_size+Arena,data=D_data,family = quasipoisson)
mod10summary(mod10.1)
Call:
glm(formula = f_TotMatings ~ Gr_size + Arena, family = quasipoisson,
data = D_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-2.4900 -1.0500 -0.1716 0.6617 3.6136
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 1.1314 0.1161 9.742 5.33e-16 ***
Gr_sizeLG -0.3193 0.1683 -1.898 0.0607 .
ArenaSmall -0.2372 0.1648 -1.440 0.1532
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
(Dispersion parameter for quasipoisson family taken to be 1.550111)
Null deviance: 171.30 on 98 degrees of freedom
Residual deviance: 160.59 on 96 degrees of freedom
(104 Beobachtungen als fehlend gelöscht)
AIC: NA
Number of Fisher Scoring iterations: 5
Anova(mod10.1,type=2)
Analysis of Deviance Table (Type II tests)
Response: f_TotMatings
LR Chisq Df Pr(>Chisq)
Gr_size 3.6862 1 0.05486 .
Arena 2.0954 1 0.14774
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
We calculated means and SE for each treatment: Copulations per partner in small groups (SE) = 1.79 (0.12)
mean(D_data$m_meanCop[D_data$Gr_size=='SG'],na.rm=T)
standard_error(D_data$m_meanCop[D_data$Gr_size=='SG'])
Copulations per partner in large groups (SE) = 1.33 (0.09)
mean(D_data$m_meanCop[D_data$Gr_size=='LG'],na.rm=T)
standard_error(D_data$m_meanCop[D_data$Gr_size=='LG'])
Copulations per partner in large arena size (SE) = 1.51 (0.11)
mean(D_data$m_meanCop[D_data$Arena=='Large'],na.rm=T)
standard_error(D_data$m_meanCop[D_data$Arena=='Large'])
Copulations per partner in small arena size (SE) = 1.57 (0.1)
mean(D_data$m_meanCop[D_data$Arena=='Small'],na.rm=T)
standard_error(D_data$m_meanCop[D_data$Arena=='Small'])
GLM for copulations per partner including interaction between group and arena size treatment:
=glm(cbind(m_cMS,m_TotMatings)~Gr_size*Arena,data=D_data,family = quasibinomial)
mod11Anova(mod11,type=2)
Analysis of Deviance Table (Type II tests)
Response: cbind(m_cMS, m_TotMatings)
LR Chisq Df Pr(>Chisq)
Gr_size 17.5682 1 2.772e-05 ***
Arena 0.4728 1 0.4917
Gr_size:Arena 1.6703 1 0.1962
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
GLM for copulations per partner excluding interaction between group and arena size treatment:
.1=glm(cbind(m_cMS,m_TotMatings)~Gr_size+Arena,data=D_data,family = quasibinomial)
mod11summary(mod11.1)
Call:
glm(formula = cbind(m_cMS, m_TotMatings) ~ Gr_size + Arena, family = quasibinomial,
data = D_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-1.1268 -0.1276 0.1645 0.2889 0.7831
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -0.63273 0.07417 -8.531 3.02e-13 ***
Gr_sizeLG 0.34336 0.08231 4.172 6.90e-05 ***
ArenaSmall 0.05651 0.08236 0.686 0.494
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
(Dispersion parameter for quasibinomial family taken to be 0.1717382)
Null deviance: 18.871 on 93 degrees of freedom
Residual deviance: 15.865 on 91 degrees of freedom
(99 Beobachtungen als fehlend gelöscht)
AIC: NA
Number of Fisher Scoring iterations: 3
Anova(mod11.1,type=2)
Analysis of Deviance Table (Type II tests)
Response: cbind(m_cMS, m_TotMatings)
LR Chisq Df Pr(>Chisq)
Gr_size 17.4924 1 2.885e-05 ***
Arena 0.4708 1 0.4926
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
We calculated means and SE for each treatment: Copulations per partner in small groups (SE) = 1.61 (0.1)
mean(D_data$f_meanCop[D_data$Gr_size=='SG'],na.rm=T)
standard_error(D_data$f_meanCop[D_data$Gr_size=='SG'])
Copulations per partner in large groups (SE) = 1.13 (0.06)
mean(D_data$f_meanCop[D_data$Gr_size=='LG'],na.rm=T)
standard_error(D_data$f_meanCop[D_data$Gr_size=='LG'])
Copulations per partner in large arena size (SE) = 1.42 (0.07)
mean(D_data$f_meanCop[D_data$Arena=='Large'],na.rm=T)
standard_error(D_data$f_meanCop[D_data$Arena=='Large'])
Copulations per partner in small arena size (SE) = 1.4 (0.13)
mean(D_data$f_meanCop[D_data$Arena=='Small'],na.rm=T)
standard_error(D_data$f_meanCop[D_data$Arena=='Small'])
GLM for copulations per partner including interaction between group and arena size treatment:
=glm(cbind(f_cMS,f_TotMatings)~Gr_size*Arena,data=D_data,family = quasibinomial)
mod12Anova(mod12,type=2)
Analysis of Deviance Table (Type II tests)
Response: cbind(f_cMS, f_TotMatings)
LR Chisq Df Pr(>Chisq)
Gr_size 25.4678 1 4.498e-07 ***
Arena 0.0412 1 0.8391
Gr_size:Arena 0.2179 1 0.6407
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
GLM for copulations per partner excluding interaction between group and arena size treatment:
.1=glm(cbind(f_cMS,f_TotMatings)~Gr_size+Arena,data=D_data,family = quasibinomial)
mod12summary(mod12.1)
Call:
glm(formula = cbind(f_cMS, f_TotMatings) ~ Gr_size + Arena, family = quasibinomial,
data = D_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-1.11605 -0.14258 0.09933 0.15315 1.23097
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -0.52471 0.05415 -9.690 3.45e-15 ***
Gr_sizeLG 0.38418 0.07577 5.070 2.46e-06 ***
ArenaSmall 0.01544 0.07563 0.204 0.839
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
(Dispersion parameter for quasibinomial family taken to be 0.1311458)
Null deviance: 14.763 on 83 degrees of freedom
Residual deviance: 11.140 on 81 degrees of freedom
(104 Beobachtungen als fehlend gelöscht)
AIC: NA
Number of Fisher Scoring iterations: 3
Anova(mod12.1,type=2)
Analysis of Deviance Table (Type II tests)
Response: cbind(f_cMS, f_TotMatings)
LR Chisq Df Pr(>Chisq)
Gr_size 25.7447 1 3.897e-07 ***
Arena 0.0417 1 0.8383
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
We calculated means and SE for each treatment: Copulation duration in small groups (SE) = 78.98 (4.88)
mean(D_data$m_MatingDuration_av[D_data$Gr_size=='SG'],na.rm=T)
standard_error(D_data$m_MatingDuration_av[D_data$Gr_size=='SG'])
Copulation duration in large groups (SE) = 74.8 (4.7)
mean(D_data$m_MatingDuration_av[D_data$Gr_size=='LG'],na.rm=T)
standard_error(D_data$m_MatingDuration_av[D_data$Gr_size=='LG'])
Copulation duration in large arena size (SE) = 77.41 (5.15)
mean(D_data$m_MatingDuration_av[D_data$Arena=='Large'],na.rm=T)
standard_error(D_data$m_MatingDuration_av[D_data$Arena=='Large'])
Copulation duration in small arena size (SE) = 75.95 (4.35)
mean(D_data$m_MatingDuration_av[D_data$Arena=='Small'],na.rm=T)
standard_error(D_data$m_MatingDuration_av[D_data$Arena=='Small'])
GLM for copulation duration including interaction between group and arena size treatment:
=glm(m_MatingDuration_av~Gr_size*Arena,data=D_data,family = gaussian)
mod13Anova(mod13,type=2)
Analysis of Deviance Table (Type II tests)
Response: m_MatingDuration_av
LR Chisq Df Pr(>Chisq)
Gr_size 0.43450 1 0.5098
Arena 0.11108 1 0.7389
Gr_size:Arena 0.04691 1 0.8285
GLM for copulation duration excluding interaction between group and arena size treatment:
.1=glm(m_MatingDuration_av~Gr_size+Arena,data=D_data,family = gaussian)
mod13summary(mod13.1)
Call:
glm(formula = m_MatingDuration_av ~ Gr_size + Arena, family = gaussian,
data = D_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-44.333 -21.092 -9.408 10.981 111.783
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 80.333 6.457 12.441 <2e-16 ***
Gr_sizeLG -4.615 6.965 -0.663 0.509
ArenaSmall -2.327 6.946 -0.335 0.738
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
(Dispersion parameter for gaussian family taken to be 1091.532)
Null deviance: 99859 on 93 degrees of freedom
Residual deviance: 99329 on 91 degrees of freedom
(109 Beobachtungen als fehlend gelöscht)
AIC: 929.27
Number of Fisher Scoring iterations: 2
Anova(mod13.1,type=2)
Analysis of Deviance Table (Type II tests)
Response: m_MatingDuration_av
LR Chisq Df Pr(>Chisq)
Gr_size 0.43909 1 0.5076
Arena 0.11225 1 0.7376
We calculated means and SE for each treatment: Copulation duration in small groups (SE) = 84.13 (6.9)
mean(D_data$f_MatingDuration_av[D_data$Gr_size=='SG'],na.rm=T)
standard_error(D_data$f_MatingDuration_av[D_data$Gr_size=='SG'])
Copulation duration in large groups (SE) = 68.47 (3.35)
mean(D_data$f_MatingDuration_av[D_data$Gr_size=='LG'],na.rm=T)
standard_error(D_data$f_MatingDuration_av[D_data$Gr_size=='LG'])
Copulation duration in large arena size (SE) = 80.27 (7.07)
mean(D_data$f_MatingDuration_av[D_data$Arena=='Large'],na.rm=T)
standard_error(D_data$f_MatingDuration_av[D_data$Arena=='Large'])
Copulation duration in small arena size (SE) = 74.55 (4.38)
mean(D_data$f_MatingDuration_av[D_data$Arena=='Small'],na.rm=T)
standard_error(D_data$f_MatingDuration_av[D_data$Arena=='Small'])
GLM for copulation duration including interaction between group and arena size treatment:
=glm(f_MatingDuration_av~Gr_size*Arena,data=D_data,family = gaussian)
mod14Anova(mod14,type=2)
Analysis of Deviance Table (Type II tests)
Response: f_MatingDuration_av
LR Chisq Df Pr(>Chisq)
Gr_size 2.90863 1 0.08811 .
Arena 0.17022 1 0.67991
Gr_size:Arena 1.20855 1 0.27162
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
GLM for copulation duration excluding interaction between group and arena size treatment:
.1=glm(f_MatingDuration_av~Gr_size+Arena,data=D_data,family = gaussian)
mod14summary(mod14.1)
Call:
glm(formula = f_MatingDuration_av ~ Gr_size + Arena, family = gaussian,
data = D_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-45.913 -21.965 -7.868 11.425 252.462
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 85.538 6.587 12.986 <2e-16 ***
Gr_sizeLG -15.145 8.892 -1.703 0.0924 .
ArenaSmall -3.625 8.797 -0.412 0.6814
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
(Dispersion parameter for gaussian family taken to be 1555.818)
Null deviance: 129651 on 82 degrees of freedom
Residual deviance: 124465 on 80 degrees of freedom
(120 Beobachtungen als fehlend gelöscht)
AIC: 850.52
Number of Fisher Scoring iterations: 2
Anova(mod14.1,type=2)
Analysis of Deviance Table (Type II tests)
Response: f_MatingDuration_av
LR Chisq Df Pr(>Chisq)
Gr_size 2.90107 1 0.08852 .
Arena 0.16978 1 0.68031
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
We calculated means and SE for each treatment: Reproductive success in small groups (SE) = 64.2 (9.45)
mean(D_data$m_RS[D_data$Gr_size=='SG'],na.rm=T)
standard_error(D_data$m_RS[D_data$Gr_size=='SG'])
Reproductive success in large groups (SE) = 49.29 (6.14)
mean(D_data$m_RS[D_data$Gr_size=='LG'],na.rm=T)
standard_error(D_data$m_RS[D_data$Gr_size=='LG'])
Reproductive success in large arena size (SE) = 51.24 (6.2)
mean(D_data$m_RS[D_data$Arena=='Large'],na.rm=T)
standard_error(D_data$m_RS[D_data$Arena=='Large'])
Reproductive success in small arena size (SE) = 61.1 (9.19)
mean(D_data$m_RS[D_data$Arena=='Small'],na.rm=T)
standard_error(D_data$m_RS[D_data$Arena=='Small'])
GLM for reproductive success including interaction between group and arena size treatment:
=glm(m_RS~Gr_size*Arena,data=D_data,family = quasipoisson)
mod15Anova(mod15,type=2)
Analysis of Deviance Table (Type II tests)
Response: m_RS
LR Chisq Df Pr(>Chisq)
Gr_size 1.56524 1 0.2109
Arena 0.49398 1 0.4822
Gr_size:Arena 1.22773 1 0.2678
GLM for reproductive success excluding interaction between group and arena size treatment:
.1=glm(m_RS~Gr_size+Arena,data=D_data,family = quasipoisson)
mod15summary(mod15.1)
Call:
glm(formula = m_RS ~ Gr_size + Arena, family = quasipoisson,
data = D_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-11.6566 -9.6552 -0.6194 4.4727 21.1646
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 4.0831 0.1767 23.111 <2e-16 ***
Gr_sizeLG -0.2413 0.1932 -1.249 0.215
ArenaSmall 0.1355 0.1933 0.701 0.485
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
(Dispersion parameter for quasipoisson family taken to be 52.69429)
Null deviance: 6253.5 on 103 degrees of freedom
Residual deviance: 6126.4 on 101 degrees of freedom
(99 Beobachtungen als fehlend gelöscht)
AIC: NA
Number of Fisher Scoring iterations: 5
Anova(mod15.1,type=2)
Analysis of Deviance Table (Type II tests)
Response: m_RS
LR Chisq Df Pr(>Chisq)
Gr_size 1.55751 1 0.2120
Arena 0.49155 1 0.4832
We calculated means and SE for each treatment: Reproductive success in small groups (SE) = 51.59 (6.91)
mean(D_data$f_RS[D_data$Gr_size=='SG'],na.rm=T)
standard_error(D_data$f_RS[D_data$Gr_size=='SG'])
Reproductive success in large groups (SE) = 48.93 (7.11)
mean(D_data$f_RS[D_data$Gr_size=='LG'],na.rm=T)
standard_error(D_data$f_RS[D_data$Gr_size=='LG'])
Reproductive success in large arena size (SE) = 52.76 (7.04)
mean(D_data$f_RS[D_data$Arena=='Large'],na.rm=T)
standard_error(D_data$f_RS[D_data$Arena=='Large'])
Reproductive success in small arena size (SE) = 47.85 (7)
mean(D_data$f_RS[D_data$Arena=='Small'],na.rm=T)
standard_error(D_data$f_RS[D_data$Arena=='Small'])
GLM for reproductive success including interaction between group and arena size treatment:
=glm(f_RS~Gr_size*Arena,data=D_data,family = quasipoisson)
mod16Anova(mod16,type=2)
Analysis of Deviance Table (Type II tests)
Response: f_RS
LR Chisq Df Pr(>Chisq)
Gr_size 0.03445 1 0.8528
Arena 0.20764 1 0.6486
Gr_size:Arena 1.54223 1 0.2143
GLM for reproductive success excluding interaction between group and arena size treatment:
.1=glm(f_RS~Gr_size+Arena,data=D_data,family = quasipoisson)
mod16summary(mod16.1)
Call:
glm(formula = f_RS ~ Gr_size + Arena, family = quasipoisson,
data = D_data)
Deviance Residuals:
Min 1Q Median 3Q Max
-10.3437 -9.8817 0.8721 5.6151 9.5213
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 3.97960 0.15361 25.907 <2e-16 ***
Gr_sizeLG -0.03737 0.20234 -0.185 0.854
ArenaSmall -0.09137 0.20157 -0.453 0.651
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
(Dispersion parameter for quasipoisson family taken to be 48.91479)
Null deviance: 6268.7 on 98 degrees of freedom
Residual deviance: 6255.2 on 96 degrees of freedom
(104 Beobachtungen als fehlend gelöscht)
AIC: NA
Number of Fisher Scoring iterations: 5
Anova(mod16.1,type=2)
Analysis of Deviance Table (Type II tests)
Response: f_RS
LR Chisq Df Pr(>Chisq)
Gr_size 0.03416 1 0.8534
Arena 0.20588 1 0.6500
We calculated adjusted p-values within sex and treatment using the false discovery rate correction (FDR). Adjusted p-values for population size treatment effect in females:
=data.table(round(p.adjust(cbind(Anova(mod4.1,type=2)[1,3],Anova(mod6.1,type=2)[1,3],Anova(mod8.1,type=2)[1,3],Anova(mod10.1,type=2)[1,3],Anova(mod12.1,type=2)[1,3],Anova(mod14.1,type=2)[1,3],Anova(mod16.1,type=2)[1,3]), method = 'fdr'),digit=3)) # Compute FDR corrected p-values
tab1=rbind('Copulation attempts','Copulations per attempt','Number of partners','Number copulations','Copulations per partner','Copulation duration','Reproductive success')
traits= cbind(traits,tab1)
tab1colnames(tab1)= cbind('Trait','Adj. p-value')
tab1
Trait Adj. p-value
1: Copulation attempts 0.015
2: Copulations per attempt 0.936
3: Number of partners 0.901
4: Number copulations 0.128
5: Copulations per partner 0.000
6: Copulation duration 0.155
7: Reproductive success 0.936
Adjusted p-values for arena size treatment effect in females:
=data.table(round(p.adjust(cbind(Anova(mod4.1,type=2)[2,3],Anova(mod6.1,type=2)[2,3],Anova(mod8.1,type=2)[2,3],Anova(mod10.1,type=2)[2,3],Anova(mod12.1,type=2)[2,3],Anova(mod14.1,type=2)[2,3],Anova(mod16.1,type=2)[2,3]), method = 'fdr'),digit=3)) # Compute FDR corrected p-values
tab2= cbind(traits,tab2)
tab2colnames(tab2)= cbind('Trait','Adj. p-value')
tab2
Trait Adj. p-value
1: Copulation attempts 0.794
2: Copulations per attempt 0.477
3: Number of partners 0.477
4: Number copulations 0.477
5: Copulations per partner 0.838
6: Copulation duration 0.794
7: Reproductive success 0.794
Adjusted p-values for population size treatment effect in males:
=data.table(round(p.adjust(cbind(Anova(mod3.1,type=2)[1,3],Anova(mod5.1,type=2)[1,3],Anova(mod7.1,type=2)[1,3],Anova(mod9.1,type=2)[1,3],Anova(mod11.1,type=2)[1,3],Anova(mod13.1,type=2)[1,3],Anova(mod15.1,type=2)[1,3]), method = 'fdr'),digit=3)) # Compute FDR corrected p-values
tab3= cbind(traits,tab3)
tab3colnames(tab3)= cbind('Trait','Adj. p-value')
tab3
Trait Adj. p-value
1: Copulation attempts 0.002
2: Copulations per attempt 0.773
3: Number of partners 0.788
4: Number copulations 0.064
5: Copulations per partner 0.000
6: Copulation duration 0.711
7: Reproductive success 0.371
Adjusted p-values for population size treatment effect in males:
=data.table(round(p.adjust(cbind(Anova(mod3.1,type=2)[2,3],Anova(mod5.1,type=2)[2,3],Anova(mod7.1,type=2)[2,3],Anova(mod9.1,type=2)[2,3],Anova(mod11.1,type=2)[2,3],Anova(mod13.1,type=2)[2,3],Anova(mod15.1,type=2)[2,3]), method = 'fdr'),digit=3)) # Compute FDR corrected p-values
tab4= cbind(traits,tab4)
tab4colnames(tab4)= cbind('Trait','Adj. p-value')
tab4
Trait Adj. p-value
1: Copulation attempts 0.819
2: Copulations per attempt 0.819
3: Number of partners 0.819
4: Number copulations 0.819
5: Copulations per partner 0.819
6: Copulation duration 0.819
7: Reproductive success 0.819
Here we plotted the mating behaviour and reproductive success per treatment and sex.
## Figures for mating behaviour and reproductive success (Figure S2-S4) ####
# Create factor for treatment categories
$TreatCgroup <- factor(paste(D_data$Sex,D_data$Gr_size, sep=" "), levels = c("F SG", "F LG", "M SG",'M LG'))
D_data$TreatCarena <- factor(paste(D_data$Sex,D_data$Arena, sep=" "), levels = c("F Large", "F Small", "M Large",'M Small'))
D_data
<-ggplot(D_data, aes(x=Sex, y=as.numeric(Total_Encounters),fill=TreatCgroup, col=TreatCgroup,alpha=TreatCgroup)) +
p3geom_point(position=position_jitterdodge(jitter.width=0.5,jitter.height = 0,dodge.width=1.2),shape=19, size = 2)+
stat_summary(fun.min =lower_CI ,
fun.max = upper_CI ,fun = mean,
position=position_dodge2(0.3),col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, linewidth = 1.15)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("white","white","white","white"),alpha=c(1,1,1,1),show.legend = F, stroke = 0,linewidth = 1.2)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, stroke = 0,linewidth = 1.2)+
scale_color_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
scale_fill_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
scale_alpha_manual(values=c(0.5,0.75,0.5,0.75),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
xlab('Sex')+ylab("Copulation attempts")+ggtitle('')+ theme(plot.title = element_text(hjust = 0.5))+
scale_x_discrete(labels = c('Female','Male'),drop=FALSE)+ ylim(0,30)+labs(tag = "C")+
annotate("text",label='n =',x=0.55,y=30,size=4)+
annotate("text",label='54',x=0.78,y=30,size=4)+
annotate("text",label='45',x=1.23,y=30,size=4)+
annotate("text",label='46',x=1.78,y=30,size=4)+
annotate("text",label='58',x=2.23,y=30,size=4)+
guides(colour = guide_legend(override.aes = list(size=4)))+
fig_theme
.2<-ggplot(D_data, aes(x=Sex, y=as.numeric(Total_Encounters),fill=TreatCarena, col=TreatCarena,alpha=TreatCarena)) +
p3geom_point(position=position_jitterdodge(jitter.width=0.5,jitter.height = 0,dodge.width=1.2),shape=19, size = 2)+
stat_summary(fun.min =lower_CI ,
fun.max = upper_CI ,fun = mean,
position=position_dodge2(0.3),col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, linewidth = 1.15)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("white","white","white","white"),alpha=c(1,1,1,1),show.legend = F, stroke = 0,linewidth = 1.2)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, stroke = 0,linewidth = 1.2)+
scale_color_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
scale_fill_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
scale_alpha_manual(values=c(0.5,0.75,0.5,0.75),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
xlab('Sex')+ylab("")+ggtitle('')+ theme(plot.title = element_text(hjust = 0.5))+
scale_x_discrete(labels = c('Female','Male'),drop=FALSE)+ ylim(0,30)+labs(tag = "D")+
annotate("text",label='n =',x=0.55,y=30,size=4)+
annotate("text",label='51',x=0.78,y=30,size=4)+
annotate("text",label='48',x=1.23,y=30,size=4)+
annotate("text",label='55',x=1.78,y=30,size=4)+
annotate("text",label='49',x=2.23,y=30,size=4)+
guides(colour = guide_legend(override.aes = list(size=4)))+
fig_theme
### Plot: Copulations per attempt ####
<-ggplot(D_data, aes(x=Sex, y=as.numeric(Prop_MS),fill=TreatCgroup, col=TreatCgroup,alpha=TreatCgroup)) +
p4geom_point(position=position_jitterdodge(jitter.width=0.5,jitter.height = 0,dodge.width=1.2),shape=19, size = 2)+
stat_summary(fun.min =lower_CI ,
fun.max = upper_CI ,fun = mean,
position=position_dodge2(0.3),col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, linewidth = 1.15)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("white","white","white","white"),alpha=c(1,1,1,1),show.legend = F, stroke = 0,linewidth = 1.2)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, stroke = 0,linewidth = 1.2)+
scale_color_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
scale_fill_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
scale_alpha_manual(values=c(0.5,0.75,0.5,0.75),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
xlab('')+ylab("Copulations per attempt")+ggtitle('')+ theme(plot.title = element_text(hjust = 0.5))+
scale_x_discrete(labels = c('Female','Male'),drop=FALSE)+ ylim(0,1.1)+labs(tag = "A")+
annotate("text",label='n =',x=0.55,y=1.1,size=4)+
annotate("text",label='54',x=0.78,y=1.1,size=4)+
annotate("text",label='45',x=1.23,y=1.1,size=4)+
annotate("text",label='46',x=1.78,y=1.1,size=4)+
annotate("text",label='58',x=2.23,y=1.1,size=4)+
guides(colour = guide_legend(override.aes = list(size=4)))+
fig_theme
.2<-ggplot(D_data, aes(x=Sex, y=as.numeric(Prop_MS),fill=TreatCarena, col=TreatCarena,alpha=TreatCarena)) +
p4geom_point(position=position_jitterdodge(jitter.width=0.5,jitter.height = 0,dodge.width=1.2),shape=19, size = 2)+
stat_summary(fun.min =lower_CI ,
fun.max = upper_CI ,fun = mean,
position=position_dodge2(0.3),col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, linewidth = 1.15)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("white","white","white","white"),alpha=c(1,1,1,1),show.legend = F, stroke = 0,linewidth = 1.2)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, stroke = 0,linewidth = 1.2)+
scale_color_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
scale_fill_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
scale_alpha_manual(values=c(0.5,0.75,0.5,0.75),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
xlab('')+ylab("")+ggtitle('')+ theme(plot.title = element_text(hjust = 0.5))+
scale_x_discrete(labels = c('Female','Male'),drop=FALSE)+ ylim(0,1.1)+labs(tag = "B")+
annotate("text",label='n =',x=0.55,y=1.1,size=4)+
annotate("text",label='51',x=0.78,y=1.1,size=4)+
annotate("text",label='48',x=1.23,y=1.1,size=4)+
annotate("text",label='55',x=1.78,y=1.1,size=4)+
annotate("text",label='49',x=2.23,y=1.1,size=4)+
guides(colour = guide_legend(override.aes = list(size=4)))+
fig_theme
### Plot: Mating partners focal ####
<-ggplot(D_data, aes(x=Sex, y=as.numeric(MatingPartners_number),fill=TreatCgroup, col=TreatCgroup,alpha=TreatCgroup)) +
p5geom_point(position=position_jitterdodge(jitter.width=0.5,jitter.height = 0,dodge.width=1.2),shape=19, size = 2)+
stat_summary(fun.min =lower_CI ,
fun.max = upper_CI ,fun = mean,
position=position_dodge2(0.3),col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, linewidth = 1.15)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("white","white","white","white"),alpha=c(1,1,1,1),show.legend = F, stroke = 0,linewidth = 1.2)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, stroke = 0,linewidth = 1.2)+
scale_color_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
scale_fill_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
scale_alpha_manual(values=c(0.5,0.75,0.5,0.75),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
xlab('')+ylab("Number of partners")+ggtitle('')+ theme(plot.title = element_text(hjust = 0.5))+
scale_x_discrete(labels = c('Female','Male'),drop=FALSE)+ ylim(0,5.4)+labs(tag = "C")+
annotate("text",label='n =',x=0.55,y=5.4,size=4)+
annotate("text",label='54',x=0.78,y=5.4,size=4)+
annotate("text",label='45',x=1.23,y=5.4,size=4)+
annotate("text",label='46',x=1.78,y=5.4,size=4)+
annotate("text",label='58',x=2.23,y=5.4,size=4)+
guides(colour = guide_legend(override.aes = list(size=4)))+
fig_theme
.2<-ggplot(D_data, aes(x=Sex, y=as.numeric(MatingPartners_number),fill=TreatCarena, col=TreatCarena,alpha=TreatCarena)) +
p5geom_point(position=position_jitterdodge(jitter.width=0.5,jitter.height = 0,dodge.width=1.2),shape=19, size = 2)+
stat_summary(fun.min =lower_CI ,
fun.max = upper_CI ,fun = mean,
position=position_dodge2(0.3),col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, linewidth = 1.15)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("white","white","white","white"),alpha=c(1,1,1,1),show.legend = F, stroke = 0,linewidth = 1.2)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, stroke = 0,linewidth = 1.2)+
scale_color_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
scale_fill_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
scale_alpha_manual(values=c(0.5,0.75,0.5,0.75),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
xlab('')+ylab("")+ggtitle('')+ theme(plot.title = element_text(hjust = 0.5))+
scale_x_discrete(labels = c('Female','Male'),drop=FALSE)+ ylim(0,5.4)+labs(tag = "D")+
annotate("text",label='n =',x=0.55,y=5.4,size=4)+
annotate("text",label='51',x=0.78,y=5.4,size=4)+
annotate("text",label='48',x=1.23,y=5.4,size=4)+
annotate("text",label='55',x=1.78,y=5.4,size=4)+
annotate("text",label='49',x=2.23,y=5.4,size=4)+
guides(colour = guide_legend(override.aes = list(size=4)))+
fig_theme
### Plot: Number copulations ####
<-ggplot(D_data, aes(x=Sex, y=as.numeric(Matings_number),fill=TreatCgroup, col=TreatCgroup,alpha=TreatCgroup)) +
p6geom_point(position=position_jitterdodge(jitter.width=0.5,jitter.height = 0,dodge.width=1.2),shape=19, size = 2)+
stat_summary(fun.min =lower_CI ,
fun.max = upper_CI ,fun = mean,
position=position_dodge2(0.3),col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, linewidth = 1.15)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("white","white","white","white"),alpha=c(1,1,1,1),show.legend = F, stroke = 0,linewidth = 1.2)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, stroke = 0,linewidth = 1.2)+
scale_color_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
scale_fill_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
scale_alpha_manual(values=c(0.5,0.75,0.5,0.75),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
xlab('')+ylab("Number of copulations")+ggtitle('')+ theme(plot.title = element_text(hjust = 0.5))+
scale_x_discrete(labels = c('Female','Male'),drop=FALSE)+ ylim(0,12)+labs(tag = "A")+
annotate("text",label='n =',x=0.55,y=12,size=4)+
annotate("text",label='54',x=0.78,y=12,size=4)+
annotate("text",label='45',x=1.23,y=12,size=4)+
annotate("text",label='46',x=1.78,y=12,size=4)+
annotate("text",label='58',x=2.23,y=12,size=4)+
guides(colour = guide_legend(override.aes = list(size=4)))+
fig_theme
.2<-ggplot(D_data, aes(x=Sex, y=as.numeric(Matings_number),fill=TreatCarena, col=TreatCarena,alpha=TreatCarena)) +
p6geom_point(position=position_jitterdodge(jitter.width=0.5,jitter.height = 0,dodge.width=1.2),shape=19, size = 2)+
stat_summary(fun.min =lower_CI ,
fun.max = upper_CI ,fun = mean,
position=position_dodge2(0.3),col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, linewidth = 1.15)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("white","white","white","white"),alpha=c(1,1,1,1),show.legend = F, stroke = 0,linewidth = 1.2)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, stroke = 0,linewidth = 1.2)+
scale_color_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
scale_fill_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
scale_alpha_manual(values=c(0.5,0.75,0.5,0.75),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
xlab('')+ylab("")+ggtitle('')+ theme(plot.title = element_text(hjust = 0.5))+labs(tag = "B")+
scale_x_discrete(labels = c('Female','Male'),drop=FALSE)+ ylim(0,12)+
annotate("text",label='n =',x=0.55,y=12,size=4)+
annotate("text",label='51',x=0.78,y=12,size=4)+
annotate("text",label='48',x=1.23,y=12,size=4)+
annotate("text",label='55',x=1.78,y=12,size=4)+
annotate("text",label='49',x=2.23,y=12,size=4)+
guides(colour = guide_legend(override.aes = list(size=4)))+
fig_theme
###Plot: Copulations per partner ####
<-ggplot(D_data, aes(x=Sex, y=as.numeric(meanCop),fill=TreatCgroup, col=TreatCgroup,alpha=TreatCgroup)) +
p7geom_point(position=position_jitterdodge(jitter.width=0.5,jitter.height = 0,dodge.width=1.2),shape=19, size = 2)+
stat_summary(fun.min =lower_CI ,
fun.max = upper_CI ,fun = mean,
position=position_dodge2(0.3),col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, linewidth = 1.15)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("white","white","white","white"),alpha=c(1,1,1,1),show.legend = F, stroke = 0,linewidth = 1.2)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, stroke = 0,linewidth = 1.2)+
scale_color_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
scale_fill_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
scale_alpha_manual(values=c(0.5,0.75,0.5,0.75),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
xlab('Sex')+ylab("Copulations per partner")+ggtitle('')+ theme(plot.title = element_text(hjust = 0.5))+
scale_x_discrete(labels = c('Female','Male'),drop=FALSE)+ labs(tag = "C")+ylim(1,4.5)+
annotate("text",label='n =',x=0.55,y=4.5,size=4)+
annotate("text",label='54',x=0.78,y=4.5,size=4)+
annotate("text",label='45',x=1.23,y=4.5,size=4)+
annotate("text",label='46',x=1.78,y=4.5,size=4)+
annotate("text",label='58',x=2.23,y=4.5,size=4)+
guides(colour = guide_legend(override.aes = list(size=4)))+
fig_theme
.2<-ggplot(D_data, aes(x=Sex, y=as.numeric(meanCop),fill=TreatCarena, col=TreatCarena,alpha=TreatCarena)) +
p7geom_point(position=position_jitterdodge(jitter.width=0.5,jitter.height = 0,dodge.width=1.2),shape=19, size = 2)+
stat_summary(fun.min =lower_CI ,
fun.max = upper_CI ,fun = mean,
position=position_dodge2(0.3),col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, linewidth = 1.15)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("white","white","white","white"),alpha=c(1,1,1,1),show.legend = F, stroke = 0,linewidth = 1.2)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, stroke = 0,linewidth = 1.2)+
scale_color_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
scale_fill_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
scale_alpha_manual(values=c(0.5,0.75,0.5,0.75),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
xlab('Sex')+ylab("")+ggtitle('')+ theme(plot.title = element_text(hjust = 0.5))+
scale_x_discrete(labels = c('Female','Male'),drop=FALSE)+ ylim(1,4.5)+labs(tag = "D")+
annotate("text",label='n =',x=0.55,y=4.5,size=4)+
annotate("text",label='51',x=0.78,y=4.5,size=4)+
annotate("text",label='48',x=1.23,y=4.5,size=4)+
annotate("text",label='55',x=1.78,y=4.5,size=4)+
annotate("text",label='49',x=2.23,y=4.5,size=4)+
guides(colour = guide_legend(override.aes = list(size=4)))+
fig_theme
### Plot: Copulation duration ####
<-ggplot(D_data, aes(x=Sex, y=as.numeric(MatingDuration_av),fill=TreatCgroup, col=TreatCgroup,alpha=TreatCgroup)) +
p8geom_point(position=position_jitterdodge(jitter.width=0.5,jitter.height = 0,dodge.width=1.2),shape=19, size = 2)+
stat_summary(fun.min =lower_CI ,
fun.max = upper_CI ,fun = mean,
position=position_dodge2(0.3),col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, linewidth = 1.15)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("white","white","white","white"),alpha=c(1,1,1,1),show.legend = F, stroke = 0,linewidth = 1.2)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, stroke = 0,linewidth = 1.2)+
scale_color_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
scale_fill_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
scale_alpha_manual(values=c(0.5,0.75,0.5,0.75),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
xlab('Sex')+ylab("Mean copulation duration")+ggtitle('')+ theme(plot.title = element_text(hjust = 0.5))+
scale_x_discrete(labels = c('Female','Male'),drop=FALSE)+ ylim(0,390)+labs(tag = "E")+
annotate("text",label='n =',x=0.55,y=390,size=4)+
annotate("text",label='49',x=0.78,y=390,size=4)+
annotate("text",label='34',x=1.23,y=390,size=4)+
annotate("text",label='43',x=1.78,y=390,size=4)+
annotate("text",label='51',x=2.23,y=390,size=4)+
guides(colour = guide_legend(override.aes = list(size=4)))+
fig_theme
.2<-ggplot(D_data, aes(x=Sex, y=as.numeric(MatingDuration_av),fill=TreatCarena, col=TreatCarena,alpha=TreatCarena)) +
p8geom_point(position=position_jitterdodge(jitter.width=0.5,jitter.height = 0,dodge.width=1.2),shape=19, size = 2)+
stat_summary(fun.min =lower_CI ,
fun.max = upper_CI ,fun = mean,
position=position_dodge2(0.3),col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, linewidth = 1.15)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("white","white","white","white"),alpha=c(1,1,1,1),show.legend = F, stroke = 0,linewidth = 1.2)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, stroke = 0,linewidth = 1.2)+
scale_color_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
scale_fill_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
scale_alpha_manual(values=c(0.5,0.75,0.5,0.75),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
xlab('Sex')+ylab("")+ggtitle('')+ theme(plot.title = element_text(hjust = 0.5))+
scale_x_discrete(labels = c('Female','Male'),drop=FALSE)+ ylim(0,390)+labs(tag = "F")+
annotate("text",label='n =',x=0.55,y=390,size=4)+
annotate("text",label='46',x=0.78,y=390,size=4)+
annotate("text",label='37',x=1.23,y=390,size=4)+
annotate("text",label='49',x=1.78,y=390,size=4)+
annotate("text",label='45',x=2.23,y=390,size=4)+
guides(colour = guide_legend(override.aes = list(size=4)))+
fig_theme
###Plot: Reproductive success ####
<-ggplot(D_data, aes(x=Sex, y=as.numeric(Total_N_MTP1),fill=TreatCgroup, col=TreatCgroup,alpha=TreatCgroup)) +
p9geom_point(position=position_jitterdodge(jitter.width=0.5,jitter.height = 0,dodge.width=1.2),shape=19, size = 2)+
stat_summary(fun.min =lower_CI ,
fun.max = upper_CI ,fun = mean,
position=position_dodge2(0.3),col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, linewidth = 1.15)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("white","white","white","white"),alpha=c(1,1,1,1),show.legend = F, stroke = 0,linewidth = 1.2)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, stroke = 0,linewidth = 1.2)+
scale_color_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
scale_fill_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
scale_alpha_manual(values=c(0.5,0.75,0.5,0.75),name = "Treatment", labels = c('Small group','Large group','Small group','Large group'))+
xlab('Sex')+ylab("Number of offspring")+ggtitle('')+ theme(plot.title = element_text(hjust = 0.5))+
scale_x_discrete(labels = c('Female','Male'),drop=FALSE)+ ylim(0,320)+labs(tag = "A")+
annotate("text",label='n =',x=0.55,y=320,size=4)+
annotate("text",label='54',x=0.78,y=320,size=4)+
annotate("text",label='45',x=1.23,y=320,size=4)+
annotate("text",label='46',x=1.78,y=320,size=4)+
annotate("text",label='58',x=2.23,y=320,size=4)+
guides(colour = guide_legend(override.aes = list(size=4)))+
fig_theme
.2<-ggplot(D_data, aes(x=Sex, y=as.numeric(Total_N_MTP1),fill=TreatCarena, col=TreatCarena,alpha=TreatCarena)) +
p9geom_point(position=position_jitterdodge(jitter.width=0.5,jitter.height = 0,dodge.width=1.2),shape=19, size = 2)+
stat_summary(fun.min =lower_CI ,
fun.max = upper_CI ,fun = mean,
position=position_dodge2(0.3),col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, linewidth = 1.15)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("white","white","white","white"),alpha=c(1,1,1,1),show.legend = F, stroke = 0,linewidth = 1.2)+
stat_summary(fun = mean,
position=position_dodge2(0.3), size = 1,col=c("#b2182b","#b2182b","#2166AC","#2166AC"),alpha=c(0.5,0.75,0.5,0.75),show.legend = F, stroke = 0,linewidth = 1.2)+
scale_color_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
scale_fill_manual(values=c(colpal2[1],colpal2[1],colpal2[2],colpal2[2]),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
scale_alpha_manual(values=c(0.5,0.75,0.5,0.75),name = "Treatment", labels = c('Small arena','Large arena','Small arena','Large arena'))+
xlab('Sex')+ylab("")+ggtitle('')+ theme(plot.title = element_text(hjust = 0.5))+
scale_x_discrete(labels = c('Female','Male'),drop=FALSE)+ ylim(0,320)+labs(tag = "B")+
annotate("text",label='n =',x=0.55,y=320,size=4)+
annotate("text",label='51',x=0.78,y=320,size=4)+
annotate("text",label='48',x=1.23,y=320,size=4)+
annotate("text",label='55',x=1.78,y=320,size=4)+
annotate("text",label='49',x=2.23,y=320,size=4)+
guides(colour = guide_legend(override.aes = list(size=4)))+
fig_theme
#Behaviour 1 (Figure S2)
<-grid.arrange(p3+labs(tag = "A")+xlab('')+theme(legend.position = c(1.25, 0.8),plot.margin = unit(c(0.2,3.5,0,0.1), "cm"),legend.text = element_text(size=9)),p3.2+
Figure_S2labs(tag = "B")+xlab('')+theme(legend.position = c(1.25, 0.8),plot.margin = unit(c(0.2,3.5,0,0.1), "cm"),legend.text = element_text(size=9)),
+labs(tag = "C")+xlab('')+theme(legend.position = 'none',plot.margin = unit(c(0.2,3.5,0,0.1), "cm")),p4.2+labs(tag = "D")+xlab('')+theme(legend.position = 'none',plot.margin = unit(c(0.2,3.5,0,0.1), "cm")),
p4+labs(tag = "E")+xlab('Sex')+theme(legend.position = 'none',plot.margin = unit(c(0.2,3.5,0,0.1), "cm")),p5.2+labs(tag = "F")+xlab('Sex')+theme(legend.position = 'none',plot.margin = unit(c(0.2,3.5,0,0.1), "cm"))
p5nrow = 3,ncol=2) ,
Figure S2: Mating behavior of males and females under low and high density manipulation via group (left) and arena size (right). Bars indicate means and 95% CI.
= plot_grid(Figure_S2, ncol=1, rel_heights=c(0.1, 1)) # rel_heights values control title margins Figure_S2
#Behavior 2 (Figure S3)
<-grid.arrange(p6+labs(tag = "A")+xlab('')+theme(legend.position = c(1.25, 0.8),plot.margin = unit(c(0.2,3.5,0,0.1), "cm"),legend.text = element_text(size=9)),p6.2+labs(tag = "B")+xlab('')+theme(legend.position = c(1.25, 0.8),plot.margin = unit(c(0.2,3.5,0,0.1), "cm"),legend.text = element_text(size=9)),
Figure_S3+labs(tag = "C")+xlab('')+theme(legend.position = 'none',plot.margin = unit(c(0.2,3.5,0,0.1), "cm")),p7.2+labs(tag = "D")+xlab('')+theme(legend.position = 'none',plot.margin = unit(c(0.2,3.5,0,0.1), "cm")),
p7+labs(tag = "E")+xlab('Sex')+theme(legend.position = 'none',plot.margin = unit(c(0.2,3.5,0,0.1), "cm")),p8.2+labs(tag = "F")+xlab('Sex')+theme(legend.position = 'none',plot.margin = unit(c(0.2,3.5,0,0.1), "cm")),nrow = 3,ncol=2) p8
Figure S3: Mating behavior of males and females under low and high density manipulation via group (left) and arena size (right). Bars indicate means and 95% CI.
= plot_grid(Figure_S3, ncol=1, rel_heights=c(0.1, 1)) # rel_heights values control title margins Figure_S3
# Reproductive success (Figure S4)
<-grid.arrange(grobs = list(p9+theme(legend.position = c(1.2, 0.8),plot.margin = unit(c(0.2,4,0,0.3), "cm")),p9.2+theme(legend.position = c(1.2, 0.8),plot.margin = unit(c(0.2,4,0,0.3), "cm"))), nrow = 1,ncol=2, widths=c(2.3, 2.3)) Figure_S4
Figure S4: Reproductive success of males and females under density manipulation via group (left) and arena size (right). Bars indicate means and 95% CI.
= plot_grid(Figure_S4, ncol=1, rel_heights=c(0.1, 1)) # rel_heights values control title margins Figure_S4
sessionInfo()
R version 4.2.0 (2022-04-22 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)
Matrix products: default
locale:
[1] LC_COLLATE=German_Germany.utf8 LC_CTYPE=German_Germany.utf8
[3] LC_MONETARY=German_Germany.utf8 LC_NUMERIC=C
[5] LC_TIME=German_Germany.utf8
attached base packages:
[1] grid stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] knitr_1.42 ICC_2.4.0 data.table_1.14.8 boot_1.3-28
[5] RColorBrewer_1.1-3 car_3.1-1 carData_3.0-5 gridGraphics_0.5-1
[9] cowplot_1.1.1 EnvStats_2.7.0 dplyr_1.1.0 readr_2.1.4
[13] lmerTest_3.1-3 lme4_1.1-31 Matrix_1.5-3 gridExtra_2.3
[17] ggplot2_3.4.1 ggeffects_1.2.0 workflowr_1.7.0
loaded via a namespace (and not attached):
[1] httr_1.4.5 sass_0.4.5 bit64_4.0.5
[4] vroom_1.6.1 jsonlite_1.8.4 splines_4.2.0
[7] bslib_0.4.2 getPass_0.2-2 highr_0.10
[10] yaml_2.3.7 numDeriv_2016.8-1.1 pillar_1.8.1
[13] lattice_0.20-45 glue_1.6.2 digest_0.6.31
[16] promises_1.2.0.1 minqa_1.2.5 colorspace_2.1-0
[19] htmltools_0.5.4 httpuv_1.6.9 pkgconfig_2.0.3
[22] scales_1.2.1 processx_3.8.0 whisker_0.4.1
[25] later_1.3.0 tzdb_0.3.0 git2r_0.31.0
[28] tibble_3.2.0 generics_0.1.3 farver_2.1.1
[31] ellipsis_0.3.2 cachem_1.0.7 withr_2.5.0
[34] cli_3.6.1 magrittr_2.0.3 crayon_1.5.2
[37] evaluate_0.20 ps_1.7.2 fs_1.6.1
[40] fansi_1.0.4 nlme_3.1-157 MASS_7.3-56
[43] tools_4.2.0 hms_1.1.2 lifecycle_1.0.3
[46] stringr_1.5.0 munsell_0.5.0 callr_3.7.3
[49] compiler_4.2.0 jquerylib_0.1.4 rlang_1.0.6
[52] nloptr_2.0.3 rstudioapi_0.14 labeling_0.4.2
[55] rmarkdown_2.20 gtable_0.3.1 abind_1.4-5
[58] R6_2.5.1 fastmap_1.1.1 bit_4.0.5
[61] utf8_1.2.3 rprojroot_2.0.3 stringi_1.7.12
[64] parallel_4.2.0 Rcpp_1.0.10 vctrs_0.5.2
[67] tidyselect_1.2.0 xfun_0.37